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Cytotoxicity data in three different cell lines of 26 metal oxide nanoparticle facets in replicates of varied experimental settings including 32 descriptors (physicochemical, molecular, image analysis and periodic table descriptors - License: CC-BY 4.0.). Data are curated and used for the development of nanoQSAR models. More information about the data can be found in: https://doi.org/10.1007/s11224-021-01869-w. Access the relevant model through NanoSolveIT Cloud Platform: https://facetcytotoxicity.cloud.nanosolveit.eu/